Research Publications

Select Peer-Reviewed Publications (>1,000 citations for 17 research articles

1.     S Sharma, Computational modeling and automation to study biomolecular dynamics. Lambert Publishing, 2009 [PDF].

2.     S Sharma, et al. AAB: A generalized Java-based algorithm animator builder. 5th Intl Conf on Info Tech (CIT), 2002.

3.     S Sharma, et al. iFold: A platform for interactive folding simulations of proteins. Bioinformatics, 22: 2693-4 2006.

4.     S Sharma, et al. iFoldRNA: Three-dimensional RNA structure prediction. Bioinformatics, 24(17):1951-2 2008.

5.     S Sharma, et al. Multiscale modeling of nucleosome dynamics. Biophysical Journal, 92(5) 1457-70 2007.

6.     S Sharma, et al. Molecular dynamic simulations of cisplatin and oxaliplatin. Journal of Mol Biol, 373:1123-40 2007.

7.     S Sharma, et al. Protein folding: then and now. Archives of Biochemistry & Biophysics, 469(1):4-19 2007.

8.     S Sharma, et al. DNA sequence mediates nucleosome stability. 94(1):1-3 Biophysical Journal, 2008.

9.     S Sharma, et al. Probing protein aggregation using discrete molecular dynamics. Front in Biosci, 13:4795-808 2008.

10.   A Montillo, S Sharma, et al. Feature Selection and Imaging-Genetics Predictions using sERF regressor. MICGen 2014.

11.   J Roach, S Sharma, et al. Structure alignment via Delaunay tetrahedralization. Proteins, 60(1):66-81 2005.

12.   K Bloom, S Sharma, et al. The path of DNA in the kinetochore. Current Biology, 16:R276-R278 2006.

13.   F Ding, S Sharma, et al. Ab initio RNA folding by discrete molecular dynamics. RNA, 14(6):1164-73 2008.

14.   J McCann, S Sharma, et al. Best Practices in Biotechnology Education: CSBN. Logos Press, 335-342 2008.

15.   R Li, X Huang, S Sharma, et al. Predictive imaging-genetics models with feature selection. MICGen 2014.

16.   S Chaney, S Ramachandran, S Sharma, et al. Pt & Other Heavy Metals in Cancer Chemotherapy, 0:157-169 2009.

17.   D Bhattacharyya, S Ramachandran, S Sharma, et al. Pt 1,2-Intrastrand (GG) cross-links. PLoS One, 6(8):23582, 2011.